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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
19/01/2022 |
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Data da última atualização: |
19/01/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SUELA, M. M.; AZEVEDO, C. F.; NASCIMENTO, M.; NASCIMENTO, A. C. C.; RESENDE, M. D. V. de. |
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Afiliação: |
MATHEUS M. SUELA, UFV; CAMILA FERREIRA AZEVEDO, UFV; MOYSÉS NASCIMENTO, UFV; ANA CAROLINA CAMPANA NASCIMENTO, UFV; MARCOS DEON VILELA DE RESENDE, CNPCa. |
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Título: |
Regional heritability mapping and genome-wide association identify loci for rice traits. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Crop Science, v. 62, n. 1, p. 1-48, 2022. |
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DOI: |
https://doi.org/10.1002/csc2.20706 |
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Idioma: |
Inglês |
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Conteúdo: |
Although genome-wide association studies (GWAS) based on single-marker analysis have been widely applied in plant breeding programs, the effectivity of the methodology is still undermined by high false-positive rates and the limited power to detect associations. Bayesian methods estimated marker effects simultaneously proved to be efficient, indicating genes with important effects. Regional heritability mapping (RHM) on the other hand determines the genome region (group of markers) associated with the phenotype, consider population structure and familial relatedness and is more powerful to detect quantitative trait loci (QTL) and reduced false-positive rates than single marker methodologies. A single-marker mixed model (SM-MM), bayesian approach and RHM were used for 11 traits in 413 rice accessions genotyped for 44,100 SNP markers. Using RHM in regions of 0.21Mb and 0.69 Mb, respectively, detected 5 and 7 associated regions with 163 and 569 single nucleotide polymorphisms (SNPs), bayesian method with regions of 0.21Mb and 0.69 Mb detected regions for all traits, whereas SM-MM detected 4 single SNP?trait associations. For the 11 traits, RHM explained around 25-40 and 25-76% using genome regions of 0.21 and 0.69Mb, respectively, and SM-MM using single markers explained 1?7% of the genomic heritability. Regional heritability mapping was more effective than SM-MM in capturing major proportions of genomic heritability. The regions found in this study were within or close to the QTL noted in the Q-TARO and Gramene QTL databases. MenosAlthough genome-wide association studies (GWAS) based on single-marker analysis have been widely applied in plant breeding programs, the effectivity of the methodology is still undermined by high false-positive rates and the limited power to detect associations. Bayesian methods estimated marker effects simultaneously proved to be efficient, indicating genes with important effects. Regional heritability mapping (RHM) on the other hand determines the genome region (group of markers) associated with the phenotype, consider population structure and familial relatedness and is more powerful to detect quantitative trait loci (QTL) and reduced false-positive rates than single marker methodologies. A single-marker mixed model (SM-MM), bayesian approach and RHM were used for 11 traits in 413 rice accessions genotyped for 44,100 SNP markers. Using RHM in regions of 0.21Mb and 0.69 Mb, respectively, detected 5 and 7 associated regions with 163 and 569 single nucleotide polymorphisms (SNPs), bayesian method with regions of 0.21Mb and 0.69 Mb detected regions for all traits, whereas SM-MM detected 4 single SNP?trait associations. For the 11 traits, RHM explained around 25-40 and 25-76% using genome regions of 0.21 and 0.69Mb, respectively, and SM-MM using single markers explained 1?7% of the genomic heritability. Regional heritability mapping was more effective than SM-MM in capturing major proportions of genomic heritability. The regions found in this study were within or close to the ... Mostrar Tudo |
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Thesagro: |
Arroz; Melhoramento Genético Vegetal. |
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Thesaurus Nal: |
Bayesian theory; Genomics; Plant breeding; Rice. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02294naa a2200253 a 4500
001 2139191
005 2022-01-19
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1002/csc2.20706$2DOI
100 1 $aSUELA, M. M.
245 $aRegional heritability mapping and genome-wide association identify loci for rice traits.$h[electronic resource]
260 $c2022
520 $aAlthough genome-wide association studies (GWAS) based on single-marker analysis have been widely applied in plant breeding programs, the effectivity of the methodology is still undermined by high false-positive rates and the limited power to detect associations. Bayesian methods estimated marker effects simultaneously proved to be efficient, indicating genes with important effects. Regional heritability mapping (RHM) on the other hand determines the genome region (group of markers) associated with the phenotype, consider population structure and familial relatedness and is more powerful to detect quantitative trait loci (QTL) and reduced false-positive rates than single marker methodologies. A single-marker mixed model (SM-MM), bayesian approach and RHM were used for 11 traits in 413 rice accessions genotyped for 44,100 SNP markers. Using RHM in regions of 0.21Mb and 0.69 Mb, respectively, detected 5 and 7 associated regions with 163 and 569 single nucleotide polymorphisms (SNPs), bayesian method with regions of 0.21Mb and 0.69 Mb detected regions for all traits, whereas SM-MM detected 4 single SNP?trait associations. For the 11 traits, RHM explained around 25-40 and 25-76% using genome regions of 0.21 and 0.69Mb, respectively, and SM-MM using single markers explained 1?7% of the genomic heritability. Regional heritability mapping was more effective than SM-MM in capturing major proportions of genomic heritability. The regions found in this study were within or close to the QTL noted in the Q-TARO and Gramene QTL databases.
650 $aBayesian theory
650 $aGenomics
650 $aPlant breeding
650 $aRice
650 $aArroz
650 $aMelhoramento Genético Vegetal
700 1 $aAZEVEDO, C. F.
700 1 $aNASCIMENTO, M.
700 1 $aNASCIMENTO, A. C. C.
700 1 $aRESENDE, M. D. V. de
773 $tCrop Science$gv. 62, n. 1, p. 1-48, 2022.
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| 2. |  | PORTINHO, J. L.; GOMES, A. C. C.; KOGA-VICENTE, A.; MANZATTO, C. V.; MILANI, F. C. C.; ARAUJO, L. S. de; VICENTE, L. E. An interactive webgis platform for enhanced support of integrated environmental management of aquaculture In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 19., 2019, Santos. Anais... São José dos Campos: INPE, 2019. Artigo 96069. p. 1-4.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio Ambiente. |
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| 3. | | PORTINHO, J. L.; GOMES, A. C. C.; KOGA-VICENTE, A.; MILANI, F. C. C.; PENTEAN, R. P.; MANZATTO, C. V.; ARAUJO, L. S. de; VICENTE, L. E. The pathways influence of agricultural expansion on water quality of fish farming in Ilha Solteira reservoir, São Paulo, Brazil. Aquaculture, v. 536, article 736405, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
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